Practical Business Python

Taking care of business, one python script at a time

Mon 26 March 2018

Overview of Pandas Data Types

Posted by Chris Moffitt in articles   

article header image

Introduction

When doing data analysis, it is important to make sure you are using the correct data types; otherwise you may get unexpected results or errors. In the case of pandas, it will correctly infer data types in many cases and you can move on with your analysis without any further thought on the topic.

Despite how well pandas works, at some point in your data analysis processes, you will likely need to explicitly convert data from one type to another. This article will discuss the basic pandas data types (aka dtypes ), how they map to python and numpy data types and the options for converting from one pandas type to another.

Pandas Data Types

A data type is essentially an internal construct that a programming language uses to understand how to store and manipulate data. For instance, a program needs to understand that you can add two numbers together like 5 + 10 to get 15. Or, if you have two strings such as “cat” and “hat” you could concatenate (add) them together to get “cathat.”

A possible confusing point about pandas data types is that there is some overlap between pandas, python and numpy. This table summarizes the key points:

Pandas dtype mapping
Pandas dtype Python type NumPy type Usage
object str string_, unicode_ Text
int64 int int_, int8, int16, int32, int64, uint8, uint16, uint32, uint64 Integer numbers
float64 float float_, float16, float32, float64 Floating point numbers
bool bool bool_ True/False values
datetime64 NA datetime64[ns] Date and time values
timedelta[ns] NA NA Differences between two datetimes
category NA NA Finite list of text values

For the most part, there is no need to worry about determining if you should try to explicitly force the pandas type to a corresponding to NumPy type. Most of the time, using pandas default int64 and float64 types will work. The only reason I included in this table is that sometimes you may see the numpy types pop up on-line or in your own analysis.

For this article, I will focus on the follow pandas types:

  • object
  • int64
  • float64
  • datetime64
  • bool

The category and timedelta types are better served in an article of their own if there is interest. However, the basic approaches outlined in this article apply to these types as well.

Why do we care?

Data types are one of those things that you don’t tend to care about until you get an error or some unexpected results. It is also one of the first things you should check once you load a new data into pandas for further analysis.

I will use a very simple CSV file to illustrate a couple of common errors you might see in pandas if the data type is not correct. Additionally, an example notebook is up on github.

import numpy as np
import pandas as pd

df = pd.read_csv("sales_data_types.csv")
Customer Number Customer Name 2016 2017 Percent Growth Jan Units Month Day Year Active
0 10002.0 Quest Industries $125,000.00 $162500.00 30.00% 500 1 10 2015 Y
1 552278.0 Smith Plumbing $920,000.00 $101,2000.00 10.00% 700 6 15 2014 Y
2 23477.0 ACME Industrial $50,000.00 $62500.00 25.00% 125 3 29 2016 Y
3 24900.0 Brekke LTD $350,000.00 $490000.00 4.00% 75 10 27 2015 Y
4 651029.0 Harbor Co $15,000.00 $12750.00 -15.00% Closed 2 2 2014 N

Upon first glance, the data looks ok so we could try doing some operations to analyze the data. Let’s try adding together the 2016 and 2017 sales:

df['2016'] + df['2017']
0      $125,000.00$162500.00
1    $920,000.00$101,2000.00
2        $50,000.00$62500.00
3      $350,000.00$490000.00
4        $15,000.00$12750.00
dtype: object

This does not look right. We would like to get totals added together but pandas is just concatenating the two values together to create one long string. A clue to the problem is the line that says dtype: object. An object is a string in pandas so it performs a string operation instead of a mathematical one.

If we want to see what all the data types are in a dataframe, use df.dtypes

df.dtypes
Customer Number    float64
Customer Name       object
2016                object
2017                object
Percent Growth      object
Jan Units           object
Month                int64
Day                  int64
Year                 int64
Active              object
dtype: object

Additionally, the df.info() function shows even more useful info.

df.info()
<class 'pandas.core.frame.DataFrame'>
RangeIndex: 5 entries, 0 to 4
Data columns (total 10 columns):
Customer Number    5 non-null float64
Customer Name      5 non-null object
2016               5 non-null object
2017               5 non-null object
Percent Growth     5 non-null object
Jan Units          5 non-null object
Month              5 non-null int64
Day                5 non-null int64
Year               5 non-null int64
Active             5 non-null object
dtypes: float64(1), int64(3), object(6)
memory usage: 480.0+ bytes

After looking at the automatically assigned data types, there are several concerns:

  • The Customer Number is a float64 but it should be an int64
  • The 2016 and 2017 columns are stored as objects, not numerical values such as a float64 or int64
  • Percent Growth and Jan Units are also stored as objects not numerical values
  • We have Month , Day and Year columns that should be converted to datetime64
  • The Active column should be a boolean

Until we clean up these data types, it is going to be very difficult to do much additional analysis on this data.

In order to convert data types in pandas, there are three basic options:

  • Use astype() to force an appropriate dtype
  • Create a custom function to convert the data
  • Use pandas functions such as to_numeric() or to_datetime()

Using the astype() function

The simplest way to convert a pandas column of data to a different type is to use astype() . For instance, to convert the Customer Number to an integer we can call it like this:

df['Customer Number'].astype('int')
0     10002
1    552278
2     23477
3     24900
4    651029
Name: Customer Number, dtype: int64

In order to actually change the customer number in the original dataframe, make sure to assign it back since the astype() functions returns a copy.

df["Customer Number"] = df['Customer Number'].astype('int')
df.dtypes
Customer Number     int64
Customer Name      object
2016               object
2017               object
Percent Growth     object
Jan Units          object
Month               int64
Day                 int64
Year                int64
Active             object
dtype: object

And here is the new data frame with the Customer Number as an integer:

Customer Number Customer Name 2016 2017 Percent Growth Jan Units Month Day Year Active
0 10002 Quest Industries $125,000.00 $162500.00 30.00% 500 1 10 2015 Y
1 552278 Smith Plumbing $920,000.00 $101,2000.00 10.00% 700 6 15 2014 Y
2 23477 ACME Industrial $50,000.00 $62500.00 25.00% 125 3 29 2016 Y
3 24900 Brekke LTD $350,000.00 $490000.00 4.00% 75 10 27 2015 Y
4 651029 Harbor Co $15,000.00 $12750.00 -15.00% Closed 2 2 2014 N

This all looks good and seems pretty simple. Let’s try to do the same thing to our 2016 column and convert it to a floating point number:

df['2016'].astype('float')
ValueError       Traceback (most recent call last)
<ipython-input-45-999869d577b0> in <module>()
----> 1 df['2016'].astype('float')

[lots more code here]

ValueError: could not convert string to float: '$15,000.00'

In a similar manner, we can try to conver the Jan Units column to an integer:

df['Jan Units'].astype('int')
ValueError         Traceback (most recent call last)

<ipython-input-44-31333711e4a4> in <module>()
----> 1 df['Jan Units'].astype('int')

[lots more code here]


ValueError: invalid literal for int() with base 10: 'Closed'

Both of these return ValueError exceptions which mean that the conversions did not work.

In each of the cases, the data included values that could not be interpreted as numbers. In the sales columns, the data includes a currency symbol as well as a comma in each value. In the Jan Units columnm the last value is “Closed” which is not a number; so we get the exception.

So far it’s not looking so good for astype() as a tool. We should give it one more try on the Active column.

df['Active'].astype('bool')
0    True
1    True
2    True
3    True
4    True
Name: Active, dtype: bool

At first glance, this looks ok but upon closer inspection, there is a big problem. All values were interpreted as True but the last customer has an Active flag of N so this does not seem right.

The takeaway from this section is that astype() will only work if:

  • the data is clean and can be simply interpreted as a number
  • you want to convert a numeric value to a string object

If the data has non-numeric characters or is not homogeneous, then astype() will not be a good choice for type conversion. You will need to do additional transforms for the type change to work correctly.

Custom Conversion Functions

Since this data is a little more complex to convert, we can build a custom function that we apply to each value and convert to the appropriate data type.

For currency conversion (of this specific data set), here is a simple function we can use:

def convert_currency(val):
    """
    Convert the string number value to a float
     - Remove $
     - Remove commas
     - Convert to float type
    """
    new_val = val.replace(',','').replace('$', '')
    return float(new_val)

The code uses python’s string functions to strip out the ‘$” and ‘,’ and then convert the value to a floating point number. In this specific case, we could convert the values to integers as well but I’m choosing to use floating point in this case.

I also suspect that someone will recommend that we use a Decimal type for currency. This is not a native data type in pandas so I am purposely sticking with the float approach.

Also of note, is that the function converts the number to a python float but pandas internally converts it to a float64. As mentioned earlier, I recommend that you allow pandas to convert to specific size float or int as it determines appropriate. There is no need for you to try to downcast to a smaller or upcast to a larger byte size unless you really know why you need to do it.

Now, we can use the pandas apply function to apply this to all the values in the 2016 column.

df['2016'].apply(convert_currency)
0    125000.0
1    920000.0
2     50000.0
3    350000.0
4     15000.0
Name: 2016, dtype: float64

Success! All the values are showing as float64 so we can do all the math functions we need to.

I’m sure that the more experienced readers are asking why I did not just use a lambda function? Before I answer, here is what we could do in 1 line with a lambda function:

df['2016'].apply(lambda x: x.replace('$', '').replace(',', '')).astype('float')

Using lambda we can streamline the code into 1 line which is a perfectly valid approach. I have three main concerns with this approach:

  • If you are just learning python/pandas or if someone new to python is going to be maintaining code, I think the longer function is more readable. The primary reason is that it includes comments and can be broken down into a couple of steps. lambda functions are a little more difficult for the new user to grasp.
  • Secondly, if you are going to be using this function on multiple columns, I prefer not to duplicate the long lambda function.
  • Finally, using a function makes it easy to clean up the data when using read_csv(). I will cover usage at the end of the article.

Some may also argue that other lambda-based approaches have performance improvements over the custom function. That may be true but for the purposes of teaching new users, I think the function approach is preferrable.

Here’s a full example of converting the data in both sales columns using the convert_currency function.

df['2016'] = df['2016'].apply(convert_currency)
df['2017'] = df['2017'].apply(convert_currency)

df.dtypes
Customer Number      int64
Customer Name       object
2016               float64
2017               float64
Percent Growth      object
Jan Units           object
Month                int64
Day                  int64
Year                 int64
Active              object
dtype: object

For another example of using lambda vs. a function, we can look at the process for fixing the Percent Growth column.

Using the lambda :

df['Percent Growth'].apply(lambda x: x.replace('%', '')).astype('float') / 100

Doing the same thing with a custom function:

def convert_percent(val):
    """
    Convert the percentage string to an actual floating point percent
    - Remove %
    - Divide by 100 to make decimal
    """
    new_val = val.replace('%', '')
    return float(new_val) / 100

df['Percent Growth'].apply(convert_percent)

Both produce the same value:

0    0.30
1    0.10
2    0.25
3    0.04
4   -0.15
Name: Percent Growth, dtype: float64

The final custom function I will cover is using np.where() to convert the active column to a boolean. There are several possible ways to solve this specific problem. The np.where() approach is useful for many types of problems so I’m choosing to include it here.

The basic idea is to use the np.where() function to convert all “Y” values to True and everything else assigned False

df["Active"] = np.where(df["Active"] == "Y", True, False)

Which results in the following dataframe:

Customer Number Customer Name 2016 2017 Percent Growth Jan Units Month Day Year Active
0 10002.0 Quest Industries $125,000.00 $162500.00 30.00% 500 1 10 2015 True
1 552278.0 Smith Plumbing $920,000.00 $101,2000.00 10.00% 700 6 15 2014 True
2 23477.0 ACME Industrial $50,000.00 $62500.00 25.00% 125 3 29 2016 True
3 24900.0 Brekke LTD $350,000.00 $490000.00 4.00% 75 10 27 2015 True
4 651029.0 Harbor Co $15,000.00 $12750.00 -15.00% Closed 2 2 2014 False

The dtype is appropriately set to bool .

df.dtypes
Customer Number    float64
Customer Name       object
2016                object
2017                object
Percent Growth      object
Jan Units           object
Month                int64
Day                  int64
Year                 int64
Active                bool
dtype: object

Whether you choose to use a lambda function, create a more standard python function or use another approach like np.where() , these approaches are very flexible and can be customized for your own unique data needs.

Pandas helper functions

Pandas has a middle ground between the blunt astype() function and the more complex custom functions. These helper functions can be very useful for certain data type conversions.

If you have been following along, you’ll notice that I have not done anything with the date columns or the Jan Units column. Both of these can be converted simply using built in pandas functions such as pd.to_numeric() and pd.to_datetime() .

The reason the Jan Units conversion is problematic is the inclusion of a non-numeric value in the column. If we tried to use astype() we would get an error (as described earlier). The pd.to_numeric() function can handle these values more gracefully:

pd.to_numeric(df['Jan Units'], errors='coerce')
0    500.0
1    700.0
2    125.0
3     75.0
4      NaN
Name: Jan Units, dtype: float64

There are a couple of items of note. First, the function easily processes the data and creates a float64 column. Additionally, it replaces the invalid “Closed” value with a NaN value because we passed errors=coerce . We can leave that value there or fill it in with a 0 using fillna(0) :

pd.to_numeric(df['Jan Units'], errors='coerce').fillna(0)
0    500.0
1    700.0
2    125.0
3     75.0
4      0.0
Name: Jan Units, dtype: float64

The final conversion I will cover is converting the separate month, day and year columns into a datetime . The pandas pd.to_datetime() function is quite configurable but also pretty smart by default.

pd.to_datetime(df[['Month', 'Day', 'Year']])
0   2015-01-10
1   2014-06-15
2   2016-03-29
3   2015-10-27
4   2014-02-02
dtype: datetime64[ns]

In this case, the function combines the columns into a new series of the appropriate datateime64 dtype.

We need to make sure to assign these values back to the dataframe:

df["Start_Date"] = pd.to_datetime(df[['Month', 'Day', 'Year']])
df["Jan Units"] = pd.to_numeric(df['Jan Units'], errors='coerce').fillna(0)
Customer Number Customer Name 2016 2017 Percent Growth Jan Units Month Day Year Active Start_Date
0 10002 Quest Industries 125000.0 162500.0 0.30 500.0 1 10 2015 True 2015-01-10
1 552278 Smith Plumbing 920000.0 1012000.0 0.10 700.0 6 15 2014 True 2014-06-15
2 23477 ACME Industrial 50000.0 62500.0 0.25 125.0 3 29 2016 True 2016-03-29
3 24900 Brekke LTD 350000.0 490000.0 0.04 75.0 10 27 2015 True 2015-10-27
4 651029 Harbor Co 15000.0 12750.0 -0.15 NaN 2 2 2014 False 2014-02-02

Now the data is properly converted to all the types we need:

df.dtypes
Customer Number             int64
Customer Name              object
2016                      float64
2017                      float64
Percent Growth            float64
Jan Units                 float64
Month                       int64
Day                         int64
Year                        int64
Active                       bool
Start_Date         datetime64[ns]

The dataframe is ready for analysis!

Bringing it all together

The basic concepts of using astype() and custom functions can be included very early in the data intake process. If you have a data file that you intend to process repeatedly and it always comes in the same format, you can define the dtype and converters to be applied when reading the data. It is helpful to think of dtype as performing astype() on the data. The converters arguments allow you to apply functions to the various input columns similar to the approaches outlined above.

It is important to note that you can only apply a dtype or a converter function to a specified column once using this approach. If you try to apply both to the same column, then the dtype will be skipped.

Here is a streamlined example that does almost all of the conversion at the time the data is read into the dataframe:

df_2 = pd.read_csv("sales_data_types.csv",
                   dtype={'Customer Number': 'int'},
                   converters={'2016': convert_currency,
                               '2017': convert_currency,
                               'Percent Growth': convert_percent,
                               'Jan Units': lambda x: pd.to_numeric(x, errors='coerce'),
                               'Active': lambda x: np.where(x == "Y", True, False)
                              })

df_2.dtypes
Customer Number      int64
Customer Name       object
2016               float64
2017               float64
Percent Growth     float64
Jan Units          float64
Month                int64
Day                  int64
Year                 int64
Active              object
dtype: object

As mentioned earlier, I chose to include a lambda example as well as the function example for converting data. The only function that can not be applied here is the conversion of the Month , Day and Year columns to the corresponding datetime column. Still, this is a powerful convention that can help improve your data processing pipeline.

Summary

One of the first steps when exploring a new data set is making sure the data types are set correctly. Pandas makes reasonable inferences most of the time but there are enough subtleties in data sets that it is important to know how to use the various data conversion options available in pandas. If you have any other tips you have used or if there is interest in exploring the category data type, feel free to comment below.

Changes

  • 3-Apr-2018 : Clarify that Pandas uses numpy’s datetime64[ns]

 
       Vote on Hacker News          

Comments